J4_5LZD_005

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

5LZD|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZD_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0796

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5LZD|1|A|U|1313
5LZD|1|A|C|1314
*
5LZD|1|A|G|1338
5LZD|1|A|G|1339
5LZD|1|A|U|1340
5LZD|1|A|G|1341
5LZD|1|A|A|1342
5LZD|1|A|G|1343
*
5LZD|1|A|C|1404
5LZD|1|A|U|1405
*
5LZD|1|A|A|1597
5LZD|1|A|A|1598
5LZD|1|A|U|1599
5LZD|1|A|C|1600
5LZD|1|A|G|1601
5LZD|1|A|U|1602
5LZD|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23