J4_5LZD_010

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZD_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0785

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5LZD|1|A|G|2643
5LZD|1|A|G|2644
5LZD|1|A|G|2645
5LZD|1|A|C|2646
*
5LZD|1|A|G|2674
5LZD|1|A|A|2675
5LZD|1|A|C|2676
*
5LZD|1|A|G|2731
5LZD|1|A|G|2732
5LZD|1|A|A|2733
5LZD|1|A|A|2734
5LZD|1|A|G|2735
*
5LZD|1|A|U|2769
5LZD|1|A|G|2770
5LZD|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14