J4_5LZD_012

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5LZD|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZD_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1298

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZD|1|a|G|142
5LZD|1|a|A|143
5LZD|1|a|G|144
*
5LZD|1|a|C|178
5LZD|1|a|A|179
5LZD|1|a|U|180
5LZD|1|a|A|181
5LZD|1|a|A|182
5LZD|1|a|C|183
5LZD|1|a|G|184
*
5LZD|1|a|C|193
5LZD|1|a|C|194
5LZD|1|a|A|195
5LZD|1|a|A|196
5LZD|1|a|A|197
5LZD|1|a|G|198
*
5LZD|1|a|U|219
5LZD|1|a|G|220
5LZD|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20