3D structure

PDB id
5LZE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
5LZE|1|A|U|653, 5LZE|1|A|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5LZE_002 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.1573
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

5LZE|1|A|C|601
5LZE|1|A|A|602
5LZE|1|A|A|603
5LZE|1|A|G|604
*
5LZE|1|A|C|624
5LZE|1|A|G|625
5LZE|1|A|A|626
5LZE|1|A|A|627
5LZE|1|A|G|628
*
5LZE|1|A|C|635
5LZE|1|A|G|636
5LZE|1|A|A|637
5LZE|1|A|G|638
*
5LZE|1|A|C|650
5LZE|1|A|G|651
5LZE|1|A|U|652
5LZE|1|A|U|653
5LZE|1|A|A|654
5LZE|1|A|A|655
5LZE|1|A|G|656

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 3
50S ribosomal protein L35
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15

Coloring options:


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