J4_5LZE_004

3D structure

PDB id

5LZE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with Sec-tRNASec in the classical pre-translocation state (C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5LZE|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZE_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0946

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5LZE|1|A|G|1310
5LZE|1|A|G|1311
5LZE|1|A|U|1312
5LZE|1|A|U|1313
5LZE|1|A|C|1314
*
5LZE|1|A|G|1338
5LZE|1|A|G|1339
5LZE|1|A|U|1340
5LZE|1|A|G|1341
5LZE|1|A|A|1342
5LZE|1|A|G|1343
*
5LZE|1|A|C|1404
5LZE|1|A|U|1405
*
5LZE|1|A|A|1597
5LZE|1|A|A|1598
5LZE|1|A|U|1599
5LZE|1|A|C|1600
5LZE|1|A|G|1601
5LZE|1|A|U|1602
5LZE|1|A|A|1603
5LZE|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23