J4_5LZS_006

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

5LZS|1|5|A|2366, 5LZS|1|5|U|2369, 5LZS|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZS|1|5|C|2365
5LZS|1|5|A|2366
5LZS|1|5|A|2367
5LZS|1|5|A|2368
5LZS|1|5|U|2369
5LZS|1|5|A|2370
5LZS|1|5|U|2371
*
5LZS|1|5|A|2389
5LZS|1|5|G|2390
5LZS|1|5|G|2391
*
5LZS|1|5|C|2824
5LZS|1|5|A|2825
5LZS|1|5|U|2826
5LZS|1|5|G|2827
5LZS|1|5|U|2828
5LZS|1|5|U|2829
*
5LZS|1|5|A|3856
5LZS|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31