J4_5LZU_006

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

5LZU|1|5|A|2366, 5LZU|1|5|U|2369, 5LZU|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZU|1|5|C|2365
5LZU|1|5|A|2366
5LZU|1|5|A|2367
5LZU|1|5|A|2368
5LZU|1|5|U|2369
5LZU|1|5|A|2370
5LZU|1|5|U|2371
*
5LZU|1|5|A|2389
5LZU|1|5|G|2390
5LZU|1|5|G|2391
*
5LZU|1|5|C|2824
5LZU|1|5|A|2825
5LZU|1|5|U|2826
5LZU|1|5|G|2827
5LZU|1|5|U|2828
5LZU|1|5|U|2829
*
5LZU|1|5|A|3856
5LZU|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31