3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
AAG*CGAAAG*CCAUAAACGAUG*UU
Length
23 nucleotides
Bulged bases
5LZU|1|9|A|672, 5LZU|1|9|A|1083, 5LZU|1|9|C|1085, 5LZU|1|9|A|1087
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5LZU_015 not in the Motif Atlas
Homologous match to J4_8C3A_022
Geometric discrepancy: 0.0711
The information below is about J4_8C3A_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.4
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

5LZU|1|9|A|671
5LZU|1|9|A|672
5LZU|1|9|G|673
*
5LZU|1|9|C|1032
5LZU|1|9|G|1033
5LZU|1|9|A|1034
5LZU|1|9|A|1035
5LZU|1|9|A|1036
5LZU|1|9|G|1037
*
5LZU|1|9|C|1078
5LZU|1|9|C|1079
5LZU|1|9|A|1080
5LZU|1|9|U|1081
5LZU|1|9|A|1082
5LZU|1|9|A|1083
5LZU|1|9|A|1084
5LZU|1|9|C|1085
5LZU|1|9|G|1086
5LZU|1|9|A|1087
5LZU|1|9|U|1088
5LZU|1|9|G|1089
*
5LZU|1|9|U|1160
5LZU|1|9|U|1161

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain LL
uS17
Chain NN
uS15
Chain OO
uS11
Chain WW
uS8
Chain XX
uS12
Chain aa
eS26
Chain n
60s ribosomal protein l41
Chain p
eL43

Coloring options:


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