J4_5LZW_006
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 5LZW|1|5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LZW_006 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.0909
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LZW|1|5|G|2406
5LZW|1|5|G|2407
5LZW|1|5|U|2408
5LZW|1|5|U|2409
5LZW|1|5|C|2410
*
5LZW|1|5|G|2434
5LZW|1|5|G|2435
5LZW|1|5|U|2436
5LZW|1|5|C|2437
5LZW|1|5|A|2438
5LZW|1|5|G|2439
*
5LZW|1|5|U|2538
5LZW|1|5|C|2539
*
5LZW|1|5|G|2777
5LZW|1|5|G|2778
5LZW|1|5|C|2779
5LZW|1|5|C|2780
5LZW|1|5|G|2781
5LZW|1|5|U|2782
5LZW|1|5|A|2783
5LZW|1|5|C|2784
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- eL19
- Chain X
- uL23
- Chain g
- eL34
- Chain h
- uL29
- Chain j
- eL37
- Chain k
- eL38
- Chain l
- eL39
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