J4_8C3A_004
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GGUUC*GGUUAG*CU*AGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8C3A|1|1|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8C3A_004 not in the Motif Atlas
- Homologous match to J4_5TBW_004
- Geometric discrepancy: 0.0671
- The information below is about J4_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.4
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8C3A|1|1|G|1488
8C3A|1|1|G|1489
8C3A|1|1|U|1490
8C3A|1|1|U|1491
8C3A|1|1|C|1492
*
8C3A|1|1|G|1516
8C3A|1|1|G|1517
8C3A|1|1|U|1518
8C3A|1|1|U|1519
8C3A|1|1|A|1520
8C3A|1|1|G|1521
*
8C3A|1|1|C|1610
8C3A|1|1|U|1611
*
8C3A|1|1|A|1825
8C3A|1|1|G|1826
8C3A|1|1|U|1827
8C3A|1|1|C|1828
8C3A|1|1|G|1829
8C3A|1|1|U|1830
8C3A|1|1|A|1831
8C3A|1|1|C|1832
Current chains
- Chain 1
- 25S
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 8
- 60S ribosomal protein L25
- Chain AH
- 60S ribosomal protein L34-B
- Chain AK
- 60S ribosomal protein L37-B
- Chain AL
- 60S ribosomal protein L38
- Chain AM
- 60S ribosomal protein L39
- Chain z
- 60S ribosomal protein L19-A
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