J4_5LZX_011
3D structure
- PDB id
- 5LZX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- GUAA*UC*GUG*CGCC
- Length
- 13 nucleotides
- Bulged bases
- 5LZX|1|5|U|4677
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LZX_011 not in the Motif Atlas
- Homologous match to J4_8GLP_013
- Geometric discrepancy: 0.0612
- The information below is about J4_8GLP_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69783.1
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LZX|1|5|G|4587
5LZX|1|5|U|4588
5LZX|1|5|A|4589
5LZX|1|5|A|4590
*
5LZX|1|5|U|4620
5LZX|1|5|C|4621
*
5LZX|1|5|G|4676
5LZX|1|5|U|4677
5LZX|1|5|G|4678
*
5LZX|1|5|C|4712
5LZX|1|5|G|4713
5LZX|1|5|C|4714
5LZX|1|5|C|4715
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain B
- Ul3
- Chain O
- uL13
- Chain V
- uL14
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