J4_5LZY_001

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AUAG*CAU*AGGGUCC*GU

Length

16 nucleotides

Bulged bases

5LZY|1|2|U|8, 5LZY|1|2|U|47, 5LZY|1|2|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZY_001 not in the Motif Atlas

Homologous match to J4_5AXM_001

Geometric discrepancy: 0.2056

The information below is about J4_5AXM_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

5LZY|1|2|A|7
5LZY|1|2|U|8
5LZY|1|2|A|9
5LZY|1|2|G|10
*
5LZY|1|2|C|25
5LZY|1|2|A|26
5LZY|1|2|U|27
*
5LZY|1|2|A|43
5LZY|1|2|G|44
5LZY|1|2|G|45
5LZY|1|2|G|46
5LZY|1|2|U|47
5LZY|1|2|C|48
5LZY|1|2|C|49
*
5LZY|1|2|G|65
5LZY|1|2|U|66

Current chains

Chain 2

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain I

Ribosomal protein L10 (Predicted)