J4_5LZY_004

3D structure

PDB id

5LZY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

CAAG*CCCAGCCC*GAC*GGUAG

Length

20 nucleotides

Bulged bases

5LZY|1|5|C|216, 5LZY|1|5|C|217, 5LZY|1|5|A|218, 5LZY|1|5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZY|1|5|C|196
5LZY|1|5|A|197
5LZY|1|5|A|198
5LZY|1|5|G|199
*
5LZY|1|5|C|215
5LZY|1|5|C|216
5LZY|1|5|C|217
5LZY|1|5|A|218
5LZY|1|5|G|219
5LZY|1|5|C|220
5LZY|1|5|C|221
5LZY|1|5|C|222
*
5LZY|1|5|G|226
5LZY|1|5|A|227
5LZY|1|5|C|228
*
5LZY|1|5|G|240
5LZY|1|5|G|241
5LZY|1|5|U|242
5LZY|1|5|A|243
5LZY|1|5|G|244

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain Y

uL24