J4_5LZZ_006

3D structure

PDB id

5LZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

5LZZ|1|5|A|2366, 5LZZ|1|5|U|2369, 5LZZ|1|5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZZ|1|5|C|2365
5LZZ|1|5|A|2366
5LZZ|1|5|A|2367
5LZZ|1|5|A|2368
5LZZ|1|5|U|2369
5LZZ|1|5|A|2370
5LZZ|1|5|U|2371
*
5LZZ|1|5|A|2389
5LZZ|1|5|G|2390
5LZZ|1|5|G|2391
*
5LZZ|1|5|C|2824
5LZZ|1|5|A|2825
5LZZ|1|5|U|2826
5LZZ|1|5|G|2827
5LZZ|1|5|U|2828
5LZZ|1|5|U|2829
*
5LZZ|1|5|A|3856
5LZZ|1|5|G|3857

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

uL22

Chain R

eL19

Chain d

eL31