J4_5M1J_002

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAUGUU*ACGUC*GAG*CGUGUG

Length

21 nucleotides

Bulged bases

5M1J|1|14|U|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|C|185
5M1J|1|14|U|186
5M1J|1|14|A|187
5M1J|1|14|U|188
5M1J|1|14|G|189
5M1J|1|14|U|190
5M1J|1|14|U|191
*
5M1J|1|14|A|204
5M1J|1|14|C|205
5M1J|1|14|G|206
5M1J|1|14|U|207
5M1J|1|14|C|208
*
5M1J|1|14|G|212
5M1J|1|14|A|213
5M1J|1|14|G|214
*
5M1J|1|14|C|226
5M1J|1|14|G|227
5M1J|1|14|U|228
5M1J|1|14|G|229
5M1J|1|14|U|230
5M1J|1|14|G|231

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain 44

5.8S ribosomal RNA; 5.8S rRNA

Chain C5

60S ribosomal protein L4-A

Chain Y5

60S ribosomal protein L26-A