J4_5M1J_008

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUAAGG*CUUGAU*ACC*GUG

Length

18 nucleotides

Bulged bases

5M1J|1|14|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5M1J|1|14|C|2654
5M1J|1|14|U|2655
5M1J|1|14|A|2656
5M1J|1|14|A|2657
5M1J|1|14|G|2658
5M1J|1|14|G|2659
*
5M1J|1|14|C|2711
5M1J|1|14|U|2712
5M1J|1|14|U|2713
5M1J|1|14|G|2714
5M1J|1|14|A|2715
5M1J|1|14|U|2716
*
5M1J|1|14|A|2740
5M1J|1|14|C|2741
5M1J|1|14|C|2742
*
5M1J|1|14|G|2751
5M1J|1|14|U|2752
5M1J|1|14|G|2753

Current chains

Chain 14

25S ribosomal RNA

Nearby chains

Chain D5

60S ribosomal protein L5

Chain T5

60S ribosomal protein L21-A

Chain b5

60S ribosomal protein L29

Chain o5

60S ribosomal protein L42-B