J4_5M1J_011
3D structure
- PDB id
- 5M1J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nonstop ribosomal complex bound with Dom34 and Hbs1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUAAAAAG*CGAAAG*CCAUAAACUAUG*UUC
- Length
- 30 nucleotides
- Bulged bases
- 5M1J|1|22|A|619, 5M1J|1|22|A|623, 5M1J|1|22|A|1026, 5M1J|1|22|C|1028, 5M1J|1|22|U|1029, 5M1J|1|22|A|1030, 5M1J|1|22|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5M1J|1|22|G|616
5M1J|1|22|U|617
5M1J|1|22|U|618
5M1J|1|22|A|619
5M1J|1|22|A|620
5M1J|1|22|A|621
5M1J|1|22|A|622
5M1J|1|22|A|623
5M1J|1|22|G|624
*
5M1J|1|22|C|975
5M1J|1|22|G|976
5M1J|1|22|A|977
5M1J|1|22|A|978
5M1J|1|22|A|979
5M1J|1|22|G|980
*
5M1J|1|22|C|1021
5M1J|1|22|C|1022
5M1J|1|22|A|1023
5M1J|1|22|U|1024
5M1J|1|22|A|1025
5M1J|1|22|A|1026
5M1J|1|22|A|1027
5M1J|1|22|C|1028
5M1J|1|22|U|1029
5M1J|1|22|A|1030
5M1J|1|22|U|1031
5M1J|1|22|G|1032
*
5M1J|1|22|U|1103
5M1J|1|22|U|1104
5M1J|1|22|C|1105
Current chains
- Chain 22
- 18S ribosomal RNA
Nearby chains
- Chain 14
- Large subunit ribosomal RNA; LSU rRNA
- Chain L2
- 40S ribosomal protein S11-A
- Chain N2
- 40S ribosomal protein S13
- Chain O2
- 40S ribosomal protein S14-A
- Chain W2
- 40S ribosomal protein S22-A
- Chain X2
- 40S ribosomal protein S23-A
- Chain a2
- 40S ribosomal protein S26-B
- Chain n5
- 60S ribosomal protein L41-B
- Chain p5
- 60S ribosomal protein L43-B
Coloring options: