J4_5M1J_012

3D structure

PDB id

5M1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nonstop ribosomal complex bound with Dom34 and Hbs1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUA(2MG)*C(M2G)C*GAG(7MG)UC(5MC)*GA

Length

16 nucleotides

Bulged bases

5M1J|1|A3|U|8, 5M1J|1|A3|U|47, 5M1J|1|A3|C|48

QA status

Modified nucleotides: 2MG, M2G, 7MG, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5M1J_012 not in the Motif Atlas

Homologous match to J4_7K98_001

Geometric discrepancy: 0.1615

The information below is about J4_7K98_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

5M1J|1|A3|U|7
5M1J|1|A3|U|8
5M1J|1|A3|A|9
5M1J|1|A3|2MG|10
*
5M1J|1|A3|C|25
5M1J|1|A3|M2G|26
5M1J|1|A3|C|27
*
5M1J|1|A3|G|43
5M1J|1|A3|A|44
5M1J|1|A3|G|45
5M1J|1|A3|7MG|46
5M1J|1|A3|U|47
5M1J|1|A3|C|48
5M1J|1|A3|5MC|49
*
5M1J|1|A3|G|65
5M1J|1|A3|A|66

Current chains

Chain A3

yeast Phe-tRNA-Phe

Nearby chains

Chain 14

Large subunit ribosomal RNA; LSU rRNA

Chain 22

Small subunit ribosomal RNA; SSU rRNA

Chain I5

60S ribosomal protein L10