J4_5MC6_001

3D structure

PDB id

5MC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCAUUAAAUCA*UGCC*GUAAC*GGA

Length

23 nucleotides

Bulged bases

5MC6|1|2|A|359

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MC6|1|2|U|98
5MC6|1|2|C|99
5MC6|1|2|A|100
5MC6|1|2|U|101
5MC6|1|2|U|102
5MC6|1|2|A|103
5MC6|1|2|A|104
5MC6|1|2|A|105
5MC6|1|2|U|106
5MC6|1|2|C|107
5MC6|1|2|A|108
*
5MC6|1|2|U|306
5MC6|1|2|G|307
5MC6|1|2|C|308
5MC6|1|2|C|309
*
5MC6|1|2|G|357
5MC6|1|2|U|358
5MC6|1|2|A|359
5MC6|1|2|A|360
5MC6|1|2|C|361
*
5MC6|1|2|G|383
5MC6|1|2|G|384
5MC6|1|2|A|385

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain V

40S ribosomal protein S8-A

Chain X

40S ribosomal protein S11-A

Chain c

40S ribosomal protein S23-A