J4_5MC6_009
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 5MC6|1|BQ|U|2314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MC6_009 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.1575
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MC6|1|BQ|C|2192
5MC6|1|BQ|U|2193
5MC6|1|BQ|G|2194
*
5MC6|1|BQ|C|2248
5MC6|1|BQ|G|2249
*
5MC6|1|BQ|C|2267
5MC6|1|BQ|U|2268
5MC6|1|BQ|U|2269
5MC6|1|BQ|A|2270
5MC6|1|BQ|A|2271
5MC6|1|BQ|G|2272
5MC6|1|BQ|G|2273
5MC6|1|BQ|U|2274
5MC6|1|BQ|A|2275
5MC6|1|BQ|G|2276
*
5MC6|1|BQ|U|2310
5MC6|1|BQ|G|2311
5MC6|1|BQ|A|2312
5MC6|1|BQ|A|2313
5MC6|1|BQ|U|2314
5MC6|1|BQ|G|2315
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain AS
- 60S ribosomal protein L41-A
- Chain AW
- 60S ribosomal protein L2-A
- Chain BT
- Eukaryotic translation initiation factor 5A-1
- Chain n
- Transfer RNA; tRNA
Coloring options: