J4_5MC6_013
3D structure
- PDB id
- 5MC6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAG*UAC*GGGGUCGC*GUC
- Length
- 18 nucleotides
- Bulged bases
- 5MC6|1|n|U|8, 5MC6|1|n|U|47, 5MC6|1|n|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5MC6|1|n|G|7
5MC6|1|n|U|8
5MC6|1|n|A|9
5MC6|1|n|G|10
*
5MC6|1|n|U|25
5MC6|1|n|A|26
5MC6|1|n|C|27
*
5MC6|1|n|G|43
5MC6|1|n|G|44
5MC6|1|n|G|45
5MC6|1|n|G|46
5MC6|1|n|U|47
5MC6|1|n|C|48
5MC6|1|n|G|49
5MC6|1|n|C|50
*
5MC6|1|n|G|64
5MC6|1|n|U|65
5MC6|1|n|C|66
Current chains
- Chain n
- P-site tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain BD
- 60S ribosomal protein L10
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain m
- Transfer RNA; tRNA
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