J4_5MDW_001

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5MDW|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MDW_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0994

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5MDW|1|1|C|268
5MDW|1|1|C|269
*
5MDW|1|1|G|370
5MDW|1|1|A|371
5MDW|1|1|G|372
5MDW|1|1|U|373
5MDW|1|1|A|374
5MDW|1|1|G|375
*
5MDW|1|1|U|399
5MDW|1|1|G|400
5MDW|1|1|A|401
5MDW|1|1|A|402
5MDW|1|1|U|403
5MDW|1|1|A|404
5MDW|1|1|U|405
5MDW|1|1|G|406
*
5MDW|1|1|C|421
5MDW|1|1|A|422
5MDW|1|1|A|423
5MDW|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28