J4_5MDW_012

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5MDW|1|2|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MDW_012 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1133

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5MDW|1|2|G|115
5MDW|1|2|A|116
5MDW|1|2|G|117
5MDW|1|2|U|118
5MDW|1|2|A|119
5MDW|1|2|A|120
5MDW|1|2|U|121
5MDW|1|2|G|122
*
5MDW|1|2|U|239
5MDW|1|2|G|240
*
5MDW|1|2|C|286
5MDW|1|2|U|287
5MDW|1|2|A|288
5MDW|1|2|G|289
*
5MDW|1|2|C|311
5MDW|1|2|C|312

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16

Chain v

30S ribosomal protein S17