J4_5MDW_013

3D structure

PDB id

5MDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ArfA(A18T) and RF2 bound to the 70S ribosome (pre-accommodated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5MDW|1|2|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MDW_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0794

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5MDW|1|2|G|142
5MDW|1|2|A|143
5MDW|1|2|G|144
*
5MDW|1|2|C|178
5MDW|1|2|A|179
5MDW|1|2|U|180
5MDW|1|2|A|181
5MDW|1|2|A|182
5MDW|1|2|C|183
5MDW|1|2|G|184
*
5MDW|1|2|C|193
5MDW|1|2|C|194
5MDW|1|2|A|195
5MDW|1|2|A|196
5MDW|1|2|A|197
5MDW|1|2|G|198
*
5MDW|1|2|U|219
5MDW|1|2|G|220
5MDW|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20