J4_5MDY_004
3D structure
- PDB id
- 5MDY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ArfA and TtRF2 bound to the 70S ribosome (pre-accommodated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 5MDY|1|1|G|1271, 5MDY|1|1|A|1272, 5MDY|1|1|U|1273, 5MDY|1|1|U|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5MDY_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.0737
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
5MDY|1|1|C|1270
5MDY|1|1|G|1271
5MDY|1|1|A|1272
5MDY|1|1|U|1273
5MDY|1|1|A|1274
5MDY|1|1|A|1275
5MDY|1|1|A|1276
*
5MDY|1|1|U|1294
5MDY|1|1|C|1295
*
5MDY|1|1|G|1645
5MDY|1|1|C|1646
5MDY|1|1|U|1647
5MDY|1|1|U|1648
*
5MDY|1|1|A|2009
5MDY|1|1|G|2010
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
- Chain b
- 50S ribosomal protein L32
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