J4_5MDZ_001

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5MDZ|1|1|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MDZ_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5MDZ|1|1|C|268
5MDZ|1|1|C|269
*
5MDZ|1|1|G|370
5MDZ|1|1|A|371
5MDZ|1|1|G|372
5MDZ|1|1|U|373
5MDZ|1|1|A|374
5MDZ|1|1|G|375
*
5MDZ|1|1|U|399
5MDZ|1|1|G|400
5MDZ|1|1|A|401
5MDZ|1|1|A|402
5MDZ|1|1|U|403
5MDZ|1|1|A|404
5MDZ|1|1|U|405
5MDZ|1|1|G|406
*
5MDZ|1|1|C|421
5MDZ|1|1|A|422
5MDZ|1|1|A|423
5MDZ|1|1|G|424

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L9

Chain X

50S ribosomal protein L28