J4_5MDZ_013

3D structure

PDB id

5MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome (empty A site)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5MDZ|1|2|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MDZ_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0807

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5MDZ|1|2|G|142
5MDZ|1|2|A|143
5MDZ|1|2|G|144
*
5MDZ|1|2|C|178
5MDZ|1|2|A|179
5MDZ|1|2|U|180
5MDZ|1|2|A|181
5MDZ|1|2|A|182
5MDZ|1|2|C|183
5MDZ|1|2|G|184
*
5MDZ|1|2|C|193
5MDZ|1|2|C|194
5MDZ|1|2|A|195
5MDZ|1|2|A|196
5MDZ|1|2|A|197
5MDZ|1|2|G|198
*
5MDZ|1|2|U|219
5MDZ|1|2|G|220
5MDZ|1|2|C|221

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20