J4_5MEI_019

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GACUG*CAUAG*UGAUU*AUUAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MEI_019 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.0483

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

5MEI|1|AR|G|2130
5MEI|1|AR|A|2131
5MEI|1|AR|C|2132
5MEI|1|AR|U|2133
5MEI|1|AR|G|2134
*
5MEI|1|AR|C|2146
5MEI|1|AR|A|2147
5MEI|1|AR|U|2148
5MEI|1|AR|A|2149
5MEI|1|AR|G|2150
*
5MEI|1|AR|U|2186
5MEI|1|AR|G|2187
5MEI|1|AR|A|2188
5MEI|1|AR|U|2189
5MEI|1|AR|U|2190
*
5MEI|1|AR|A|2317
5MEI|1|AR|U|2318
5MEI|1|AR|U|2319
5MEI|1|AR|A|2320
5MEI|1|AR|A|2321
5MEI|1|AR|C|2322

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain 6

Small subunit ribosomal RNA; SSU rRNA

Chain CD

60S ribosomal protein L2-A

Chain DP

60S ribosomal protein L41-B

Chain DR

60S ribosomal protein L43-A