J4_5MEI_021

3D structure

PDB id

5MEI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Agelastatin A bound to the 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUAAG*UUGAUUU*AAACC*GUG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5MEI|1|AR|C|2654
5MEI|1|AR|U|2655
5MEI|1|AR|A|2656
5MEI|1|AR|A|2657
5MEI|1|AR|G|2658
*
5MEI|1|AR|U|2712
5MEI|1|AR|U|2713
5MEI|1|AR|G|2714
5MEI|1|AR|A|2715
5MEI|1|AR|U|2716
5MEI|1|AR|U|2717
5MEI|1|AR|U|2718
*
5MEI|1|AR|A|2738
5MEI|1|AR|A|2739
5MEI|1|AR|A|2740
5MEI|1|AR|C|2741
5MEI|1|AR|C|2742
*
5MEI|1|AR|G|2751
5MEI|1|AR|U|2752
5MEI|1|AR|G|2753

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L5

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29

Chain DQ

60S ribosomal protein L42-A