J4_5MGP_001

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5MGP|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MGP_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1123

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5MGP|1|A|C|268
5MGP|1|A|C|269
*
5MGP|1|A|G|370
5MGP|1|A|A|371
5MGP|1|A|G|372
5MGP|1|A|U|373
5MGP|1|A|A|374
5MGP|1|A|G|375
*
5MGP|1|A|U|399
5MGP|1|A|G|400
5MGP|1|A|A|401
5MGP|1|A|A|402
5MGP|1|A|U|403
5MGP|1|A|A|404
5MGP|1|A|U|405
5MGP|1|A|G|406
*
5MGP|1|A|C|421
5MGP|1|A|A|422
5MGP|1|A|A|423
5MGP|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28