J4_5MGP_005

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

5MGP|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MGP_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0743

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5MGP|1|A|U|1313
5MGP|1|A|C|1314
*
5MGP|1|A|G|1338
5MGP|1|A|G|1339
5MGP|1|A|U|1340
5MGP|1|A|G|1341
5MGP|1|A|A|1342
5MGP|1|A|G|1343
*
5MGP|1|A|C|1404
5MGP|1|A|U|1405
*
5MGP|1|A|A|1597
5MGP|1|A|A|1598
5MGP|1|A|U|1599
5MGP|1|A|C|1600
5MGP|1|A|G|1601
5MGP|1|A|U|1602
5MGP|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23