J4_5MGP_010

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MGP_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0788

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5MGP|1|A|G|2643
5MGP|1|A|G|2644
5MGP|1|A|G|2645
5MGP|1|A|C|2646
*
5MGP|1|A|G|2674
5MGP|1|A|A|2675
5MGP|1|A|C|2676
*
5MGP|1|A|G|2731
5MGP|1|A|G|2732
5MGP|1|A|A|2733
5MGP|1|A|A|2734
5MGP|1|A|G|2735
*
5MGP|1|A|U|2769
5MGP|1|A|G|2770
5MGP|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14