J4_5MGP_012

3D structure

PDB id

5MGP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5MGP|1|a|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MGP_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1658

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5MGP|1|a|G|142
5MGP|1|a|A|143
5MGP|1|a|G|144
*
5MGP|1|a|C|178
5MGP|1|a|A|179
5MGP|1|a|U|180
5MGP|1|a|A|181
5MGP|1|a|A|182
5MGP|1|a|C|183
5MGP|1|a|G|184
*
5MGP|1|a|C|193
5MGP|1|a|C|194
5MGP|1|a|A|195
5MGP|1|a|A|196
5MGP|1|a|A|197
5MGP|1|a|G|198
*
5MGP|1|a|U|219
5MGP|1|a|G|220
5MGP|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20