J4_5MLC_001

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CU*GAGUAG*UGAAUCAG*CAAG

Length

20 nucleotides

Bulged bases

5MLC|1|A|A|417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MLC_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.1731

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5MLC|1|A|C|253
5MLC|1|A|U|254
*
5MLC|1|A|G|382
5MLC|1|A|A|383
5MLC|1|A|G|384
5MLC|1|A|U|385
5MLC|1|A|A|386
5MLC|1|A|G|387
*
5MLC|1|A|U|411
5MLC|1|A|G|412
5MLC|1|A|A|413
5MLC|1|A|A|414
5MLC|1|A|U|415
5MLC|1|A|C|416
5MLC|1|A|A|417
5MLC|1|A|G|418
*
5MLC|1|A|C|433
5MLC|1|A|A|434
5MLC|1|A|A|435
5MLC|1|A|G|436

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain I

50S ribosomal protein L9, chloroplastic

Chain Y

50S ribosomal protein L28, chloroplastic