J4_5MLC_003

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCAAAC*GC*GCGC*GG

Length

15 nucleotides

Bulged bases

5MLC|1|A|G|1292, 5MLC|1|A|C|1293, 5MLC|1|A|A|1294, 5MLC|1|A|A|1296, 5MLC|1|A|G|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MLC_003 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.1906

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5MLC|1|A|C|1291
5MLC|1|A|G|1292
5MLC|1|A|C|1293
5MLC|1|A|A|1294
5MLC|1|A|A|1295
5MLC|1|A|A|1296
5MLC|1|A|C|1297
*
5MLC|1|A|G|1315
5MLC|1|A|C|1316
*
5MLC|1|A|G|1681
5MLC|1|A|C|1682
5MLC|1|A|G|1683
5MLC|1|A|C|1684
*
5MLC|1|A|G|2023
5MLC|1|A|G|2024

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 2

50S ribosomal protein L32, chloroplastic

Chain P

50S ribosomal protein L17, chloroplastic

Chain U

50S ribosomal protein L22, chloroplastic