J4_5MLC_006

3D structure

PDB id

5MLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AG*UU*AC*GU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MLC_006 not in the Motif Atlas

Homologous match to J4_5J7L_024

Geometric discrepancy: 0.1572

The information below is about J4_5J7L_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5MLC|1|A|A|1465
5MLC|1|A|G|1466
*
5MLC|1|A|U|1485
5MLC|1|A|U|1486
*
5MLC|1|A|A|1559
5MLC|1|A|C|1560
*
5MLC|1|A|G|1580
5MLC|1|A|U|1581

Current chains

Chain A

23S ribosomal RNA, chloroplastic

Nearby chains

Chain 7

PSRP5alpha, chloroplastic