J4_5MMI_009

3D structure

PDB id

5MMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the chloroplast ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAAG

Length

21 nucleotides

Bulged bases

5MMI|1|A|A|1985

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MMI_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0992

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

5MMI|1|A|C|1843
5MMI|1|A|U|1844
5MMI|1|A|G|1845
*
5MMI|1|A|C|1919
5MMI|1|A|G|1920
*
5MMI|1|A|C|1938
5MMI|1|A|C|1939
5MMI|1|A|U|1940
5MMI|1|A|A|1941
5MMI|1|A|A|1942
5MMI|1|A|G|1943
5MMI|1|A|G|1944
5MMI|1|A|U|1945
5MMI|1|A|A|1946
5MMI|1|A|G|1947
*
5MMI|1|A|C|1981
5MMI|1|A|G|1982
5MMI|1|A|A|1983
5MMI|1|A|A|1984
5MMI|1|A|A|1985
5MMI|1|A|G|1986

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2, chloroplastic