J4_5MRE_008

3D structure

PDB id

5MRE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAGUAAUUU*AU*AUAA*UC

Length

17 nucleotides

Bulged bases

5MRE|1|aa|U|121, 5MRE|1|aa|U|122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MRE_008 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1718

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5MRE|1|aa|G|115
5MRE|1|aa|A|116
5MRE|1|aa|G|117
5MRE|1|aa|U|118
5MRE|1|aa|A|119
5MRE|1|aa|A|120
5MRE|1|aa|U|121
5MRE|1|aa|U|122
5MRE|1|aa|U|123
*
5MRE|1|aa|A|243
5MRE|1|aa|U|244
*
5MRE|1|aa|A|291
5MRE|1|aa|U|292
5MRE|1|aa|A|293
5MRE|1|aa|A|294
*
5MRE|1|aa|U|317
5MRE|1|aa|C|318

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain PP

bS16m

Chain QQ

uS17m