J4_5MRF_008

3D structure

PDB id

5MRF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial ribosome - Class C

Experimental method

ELECTRON MICROSCOPY

Resolution

4.97 Å

Loop

Sequence

GAGUAAUUU*AU*AUAA*UC

Length

17 nucleotides

Bulged bases

5MRF|1|aa|U|121, 5MRF|1|aa|U|122

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5MRF_008 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.1719

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_90044.1

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5MRF|1|aa|G|115
5MRF|1|aa|A|116
5MRF|1|aa|G|117
5MRF|1|aa|U|118
5MRF|1|aa|A|119
5MRF|1|aa|A|120
5MRF|1|aa|U|121
5MRF|1|aa|U|122
5MRF|1|aa|U|123
*
5MRF|1|aa|A|243
5MRF|1|aa|U|244
*
5MRF|1|aa|A|291
5MRF|1|aa|U|292
5MRF|1|aa|A|293
5MRF|1|aa|A|294
*
5MRF|1|aa|U|317
5MRF|1|aa|C|318

Current chains

Chain aa

15S ribosomal RNA

Nearby chains

Chain PP

bS16m

Chain QQ

uS17m