J4_5NCO_001

3D structure

PDB id

5NCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5NCO|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5NCO_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0977

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5NCO|1|A|C|268
5NCO|1|A|C|269
*
5NCO|1|A|G|370
5NCO|1|A|A|371
5NCO|1|A|G|372
5NCO|1|A|U|373
5NCO|1|A|A|374
5NCO|1|A|G|375
*
5NCO|1|A|U|399
5NCO|1|A|G|400
5NCO|1|A|A|401
5NCO|1|A|A|402
5NCO|1|A|U|403
5NCO|1|A|A|404
5NCO|1|A|U|405
5NCO|1|A|G|406
*
5NCO|1|A|C|421
5NCO|1|A|A|422
5NCO|1|A|A|423
5NCO|1|A|G|424

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain Y

50S ribosomal protein L28