J4_5NCO_006
3D structure
- PDB id
- 5NCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Quaternary complex between SRP, SR, and SecYEG bound to the translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.8 Å
Loop
- Sequence
- UC*GGUGAG*CU*AAUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 5NCO|1|A|G|1341
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NCO_006 not in the Motif Atlas
- Homologous match to J4_5J7L_023
- Geometric discrepancy: 0.0745
- The information below is about J4_5J7L_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_10313.5
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NCO|1|A|U|1313
5NCO|1|A|C|1314
*
5NCO|1|A|G|1338
5NCO|1|A|G|1339
5NCO|1|A|U|1340
5NCO|1|A|G|1341
5NCO|1|A|A|1342
5NCO|1|A|G|1343
*
5NCO|1|A|C|1404
5NCO|1|A|U|1405
*
5NCO|1|A|A|1597
5NCO|1|A|A|1598
5NCO|1|A|U|1599
5NCO|1|A|C|1600
5NCO|1|A|G|1601
5NCO|1|A|U|1602
5NCO|1|A|A|1603
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain U
- 50S ribosomal protein L23
- Chain i
- Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein,Signal recognition particle protein
Coloring options: