J4_5ND8_001

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5ND8|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ND8_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1665

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5ND8|1|A|C|271
5ND8|1|A|C|272
*
5ND8|1|A|G|416
5ND8|1|A|A|417
5ND8|1|A|G|418
5ND8|1|A|U|419
5ND8|1|A|A|420
5ND8|1|A|C|421
*
5ND8|1|A|G|445
5ND8|1|A|G|446
5ND8|1|A|A|447
5ND8|1|A|A|448
5ND8|1|A|U|449
5ND8|1|A|C|450
5ND8|1|A|U|451
5ND8|1|A|G|452
*
5ND8|1|A|U|467
5ND8|1|A|A|468
5ND8|1|A|A|469
5ND8|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28