J4_5ND8_003
3D structure
- PDB id
- 5ND8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CAAG*CGUAG*CGAGU*GCGUUUAG
- Length
- 22 nucleotides
- Bulged bases
- 5ND8|1|A|U|697, 5ND8|1|A|U|698
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ND8_003 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.2393
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69347.1
- Basepair signature
- cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5ND8|1|A|C|644
5ND8|1|A|A|645
5ND8|1|A|A|646
5ND8|1|A|G|647
*
5ND8|1|A|C|669
5ND8|1|A|G|670
5ND8|1|A|U|671
5ND8|1|A|A|672
5ND8|1|A|G|673
*
5ND8|1|A|C|680
5ND8|1|A|G|681
5ND8|1|A|A|682
5ND8|1|A|G|683
5ND8|1|A|U|684
*
5ND8|1|A|G|694
5ND8|1|A|C|695
5ND8|1|A|G|696
5ND8|1|A|U|697
5ND8|1|A|U|698
5ND8|1|A|U|699
5ND8|1|A|A|700
5ND8|1|A|G|701
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain F
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
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