J4_5ND8_007

3D structure

PDB id

5ND8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

5ND8|1|A|U|1802

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ND8_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.1398

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5ND8|1|A|G|1799
5ND8|1|A|A|1800
5ND8|1|A|C|1801
5ND8|1|A|U|1802
5ND8|1|A|G|1803
*
5ND8|1|A|C|1815
5ND8|1|A|A|1816
5ND8|1|A|C|1817
5ND8|1|A|A|1818
5ND8|1|A|G|1819
*
5ND8|1|A|U|1854
5ND8|1|A|G|1855
5ND8|1|A|A|1856
5ND8|1|A|C|1857
*
5ND8|1|A|G|2002
5ND8|1|A|U|2003
5ND8|1|A|A|2004
5ND8|1|A|A|2005
5ND8|1|A|C|2006

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA