J4_5ND9_006

3D structure

PDB id

5ND9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hibernating ribosome from Staphylococcus aureus (Rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

5ND9|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5ND9_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1345

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

5ND9|1|A|U|1350
5ND9|1|A|C|1351
*
5ND9|1|A|G|1375
5ND9|1|A|G|1376
5ND9|1|A|U|1377
5ND9|1|A|U|1378
5ND9|1|A|A|1379
5ND9|1|A|G|1380
*
5ND9|1|A|C|1441
5ND9|1|A|C|1442
*
5ND9|1|A|G|1641
5ND9|1|A|C|1642
5ND9|1|A|C|1643
5ND9|1|A|C|1644
5ND9|1|A|G|1645
5ND9|1|A|U|1646
5ND9|1|A|A|1647

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L23