J4_5ND9_011
3D structure
- PDB id
- 5ND9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hibernating ribosome from Staphylococcus aureus (Rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAGUAACAC*GCU*AUAG*CC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5ND9_011 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.5207
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_90044.1
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5ND9|1|a|G|114
5ND9|1|a|A|115
5ND9|1|a|G|116
5ND9|1|a|U|117
5ND9|1|a|A|118
5ND9|1|a|A|119
5ND9|1|a|C|120
5ND9|1|a|A|121
5ND9|1|a|C|122
*
5ND9|1|a|G|246
5ND9|1|a|C|247
5ND9|1|a|U|248
*
5ND9|1|a|A|294
5ND9|1|a|U|295
5ND9|1|a|A|296
5ND9|1|a|G|297
*
5ND9|1|a|C|319
5ND9|1|a|C|320
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
- Chain q
- 30S ribosomal protein S17
Coloring options: