J4_5NDG_007
3D structure
- PDB id
- 5NDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of geneticin (G418) bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.7 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDG_007 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.0761
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5NDG|1|1|G|2130
5NDG|1|1|A|2131
5NDG|1|1|C|2132
5NDG|1|1|U|2133
5NDG|1|1|G|2134
*
5NDG|1|1|C|2146
5NDG|1|1|A|2147
5NDG|1|1|U|2148
5NDG|1|1|A|2149
5NDG|1|1|G|2150
*
5NDG|1|1|U|2186
5NDG|1|1|G|2187
5NDG|1|1|A|2188
5NDG|1|1|U|2189
5NDG|1|1|U|2190
*
5NDG|1|1|A|2317
5NDG|1|1|U|2318
5NDG|1|1|U|2319
5NDG|1|1|A|2320
5NDG|1|1|A|2321
5NDG|1|1|C|2322
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain L2
- 60S ribosomal protein L2-A
- Chain Q1
- 60S ribosomal protein L41-A
- Chain Q3
- 60S ribosomal protein L43-A
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