J4_8C3A_006
3D structure
- PDB id
- 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8C3A_006 not in the Motif Atlas
- Homologous match to J4_5TBW_006
- Geometric discrepancy: 0.0696
- The information below is about J4_5TBW_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_34476.1
- Basepair signature
- cWW-F-F-F-F-tWS-tHS-F-cWW-cWW-F-F-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
8C3A|1|1|G|2108
8C3A|1|1|A|2109
8C3A|1|1|C|2110
8C3A|1|1|U|2111
8C3A|1|1|G|2112
*
8C3A|1|1|C|2124
8C3A|1|1|A|2125
8C3A|1|1|U|2126
8C3A|1|1|A|2127
8C3A|1|1|G|2128
*
8C3A|1|1|U|2164
8C3A|1|1|G|2165
8C3A|1|1|A|2166
8C3A|1|1|U|2167
8C3A|1|1|U|2168
*
8C3A|1|1|A|2295
8C3A|1|1|U|2296
8C3A|1|1|U|2297
8C3A|1|1|A|2298
8C3A|1|1|A|2299
8C3A|1|1|C|2300
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AO
- 60S ribosomal protein L41
- Chain AQ
- 60S ribosomal protein L43-A
- Chain B
- Small subunit ribosomal RNA; SSU rRNA
- Chain j
- 60S ribosomal protein L2-B
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