J4_5NDG_021

3D structure

PDB id

5NDG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of geneticin (G418) bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

5NDG|1|5|A|2657

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NDG|1|5|C|2654
5NDG|1|5|U|2655
5NDG|1|5|A|2656
5NDG|1|5|A|2657
5NDG|1|5|G|2658
*
5NDG|1|5|U|2712
5NDG|1|5|U|2713
5NDG|1|5|G|2714
*
5NDG|1|5|C|2741
5NDG|1|5|C|2742
*
5NDG|1|5|G|2751
5NDG|1|5|U|2752
5NDG|1|5|G|2753

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l5

60S ribosomal protein L5

Chain n1

60S ribosomal protein L21-A

Chain q2

60S ribosomal protein L42-A