J4_5NDJ_001
3D structure
- PDB id
- 5NDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.15 Å
Loop
- Sequence
- GAGUAACG*UC*GUAG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5NDJ|1|13|C|760
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5NDJ_001 not in the Motif Atlas
- Homologous match to J4_4LFB_001
- Geometric discrepancy: 0.0714
- The information below is about J4_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.3
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5NDJ|1|13|G|754
5NDJ|1|13|A|755
5NDJ|1|13|G|756
5NDJ|1|13|U|757
5NDJ|1|13|A|758
5NDJ|1|13|A|759
5NDJ|1|13|C|760
5NDJ|1|13|G|761
*
5NDJ|1|13|U|880
5NDJ|1|13|C|881
*
5NDJ|1|13|G|927
5NDJ|1|13|U|928
5NDJ|1|13|A|929
5NDJ|1|13|G|930
*
5NDJ|1|13|C|952
5NDJ|1|13|C|953
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3I
- 30S ribosomal protein S12
- Chain 7I
- 30S ribosomal protein S16
- Chain 8I
- 30S ribosomal protein S17
Coloring options: